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OpenDDM

For users

  • OpenDDM
  • DDM theory
  • Performance OpenDDM
  • API reference
    • ddm.data_handling
      • ddm.data_handling.dask_image
        • ddm.data_handling.dask_image.read_data_into_dask
      • ddm.data_handling.exporting
        • ddm.data_handling.exporting.create_data_array
        • ddm.data_handling.exporting.export_data
        • ddm.data_handling.exporting.update_stored_data_array
      • ddm.data_handling.read_file
      • ddm.data_handling.read_metadata
        • ddm.data_handling.read_metadata.read_metadata
        • ddm.data_handling.read_metadata.read_metadata_lif
        • ddm.data_handling.read_metadata.read_metadata_nd2
        • ddm.data_handling.read_metadata.read_metadata_tif
    • ddm.fitting
      • ddm.fitting.DDM_Matrix
      • ddm.fitting.compute_AB
      • ddm.fitting.compute_ISF
      • ddm.fitting.doubleExp
      • ddm.fitting.findMeanSqFFT
      • ddm.fitting.findMeanSqFFT_numpy
      • ddm.fitting.genFit
      • ddm.fitting.schultz
      • ddm.fitting.singleExp
      • ddm.fitting.test_linear
    • ddm.plotting
      • ddm.plotting.plotISF
      • ddm.plotting.plotSingleExpFit
    • ddm.processing
      • ddm.processing.calc_matrix
      • ddm.processing.calc_matrix_dask
      • ddm.processing.calc_radial
      • ddm.processing.calc_radial_gpu
      • ddm.processing.ddm
      • ddm.processing.ddm_dask_cpu
      • ddm.processing.ddm_dask_gpu
      • ddm.processing.ddm_numpy
      • ddm.processing.radial_profile
      • ddm.processing.radial_profile_gpu
    • ddm.simulation
      • ddm.simulation.generate_frame
      • ddm.simulation.generate_images
      • ddm.simulation.generate_tracks
      • ddm.simulation.get_diffusion_coefficient
      • ddm.simulation.save_stack
    • ddm.utils
      • ddm.utils.dask_progressbar
      • ddm.utils.is_gpu_available
      • ddm.utils.print_available_ram
      • ddm.utils.print_cpu_count
      • ddm.utils.print_file_size
      • ddm.utils.verify_bioformats_jar

For developers/contributors

  • Development Guides
    • Testing
    • Documentation
  • Contributing Guide
  • Changelog
  • GitHub repository
  • .rst

API reference

API reference#

This page provides an auto-generated summary of OpenDDM’s API.

data_handling

fitting

plotting

processing

simulation

utils

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ddm.data_handling

By Iain Muntz, Maurits Kok, James Conboy, Irene Istúriz

© Copyright 2022, Technische Universiteit Delft.